J3_7A01_016

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGCAGUC*GUGC*GACGUC

Length

18 nucleotides

Bulged bases

7A01|1|e2|C|451, 7A01|1|e2|U|454, 7A01|1|e2|G|703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|448
7A01|1|e2|C|449
7A01|1|e2|G|450
7A01|1|e2|C|451
7A01|1|e2|A|452
7A01|1|e2|G|453
7A01|1|e2|U|454
7A01|1|e2|C|455
*
7A01|1|e2|G|701
7A01|1|e2|U|702
7A01|1|e2|G|703
7A01|1|e2|C|704
*
7A01|1|e2|G|1293
7A01|1|e2|A|1294
7A01|1|e2|C|1295
7A01|1|e2|G|1296
7A01|1|e2|U|1297
7A01|1|e2|C|1298

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

Uncharacterized protein

Chain T2

60S ribosomal protein L6

Chain v2

eL32

Chain x2

eL33