J3_7A01_022

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACG*CGCUAAGG*CAC

Length

16 nucleotides

Bulged bases

7A01|1|e2|U|1996

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|1967
7A01|1|e2|G|1968
7A01|1|e2|A|1969
7A01|1|e2|C|1970
7A01|1|e2|G|1971
*
7A01|1|e2|C|1993
7A01|1|e2|G|1994
7A01|1|e2|C|1995
7A01|1|e2|U|1996
7A01|1|e2|A|1997
7A01|1|e2|A|1998
7A01|1|e2|G|1999
7A01|1|e2|G|2000
*
7A01|1|e2|C|2015
7A01|1|e2|A|2016
7A01|1|e2|C|2017

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain K2

60S acidic ribosomal protein P0

Chain M2

Uncharacterized protein