J3_7A01_026

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGAUG*CAGU*AGGGUGUAAAUCUC

Length

25 nucleotides

Bulged bases

7A01|1|e2|C|2768, 7A01|1|e2|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|G|2549
7A01|1|e2|G|2550
7A01|1|e2|A|2551
7A01|1|e2|G|2552
7A01|1|e2|A|2553
7A01|1|e2|U|2554
7A01|1|e2|G|2555
*
7A01|1|e2|C|2572
7A01|1|e2|A|2573
7A01|1|e2|G|2574
7A01|1|e2|U|2575
*
7A01|1|e2|A|2757
7A01|1|e2|G|2758
7A01|1|e2|G|2759
7A01|1|e2|G|2760
7A01|1|e2|U|2761
7A01|1|e2|G|2762
7A01|1|e2|U|2763
7A01|1|e2|A|2764
7A01|1|e2|A|2765
7A01|1|e2|A|2766
7A01|1|e2|U|2767
7A01|1|e2|C|2768
7A01|1|e2|U|2769
7A01|1|e2|C|2770

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 22

60S ribosomal protein L27

Chain y2

eL34