J3_7A01_031

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUUCG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

7A01|1|e2|C|4990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|4970
7A01|1|e2|A|4971
7A01|1|e2|U|4972
7A01|1|e2|U|4973
7A01|1|e2|C|4974
7A01|1|e2|G|4975
*
7A01|1|e2|C|4983
7A01|1|e2|C|4984
7A01|1|e2|U|4985
7A01|1|e2|G|4986
7A01|1|e2|C|4987
7A01|1|e2|U|4988
7A01|1|e2|U|4989
7A01|1|e2|C|4990
7A01|1|e2|U|4991
*
7A01|1|e2|A|5060
7A01|1|e2|A|5061
7A01|1|e2|G|5062
7A01|1|e2|G|5063

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain H2

uL22

Chain u2

eL31