J3_7A01_035
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAAAAUUAGAG*CAG*CUGGAUACCGCAGC
- Length
- 30 nucleotides
- Bulged bases
- 7A01|1|K3|A|811
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|G|807
7A01|1|K3|A|808
7A01|1|K3|A|809
7A01|1|K3|A|810
7A01|1|K3|A|811
7A01|1|K3|A|812
7A01|1|K3|A|813
7A01|1|K3|U|814
7A01|1|K3|U|815
7A01|1|K3|A|816
7A01|1|K3|G|817
7A01|1|K3|A|818
7A01|1|K3|G|819
*
7A01|1|K3|C|829
7A01|1|K3|A|830
7A01|1|K3|G|831
*
7A01|1|K3|C|843
7A01|1|K3|U|844
7A01|1|K3|G|845
7A01|1|K3|G|846
7A01|1|K3|A|847
7A01|1|K3|U|848
7A01|1|K3|A|849
7A01|1|K3|C|850
7A01|1|K3|C|851
7A01|1|K3|G|852
7A01|1|K3|C|853
7A01|1|K3|A|854
7A01|1|K3|G|855
7A01|1|K3|C|856
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain G3
- Ribosomal protein S11
- Chain I5
- 40S ribosomal protein S24
- Chain J5
- Ribosomal protein S15a
- Chain d3
- Ribosomal protein S9 (Predicted)
- Chain j3
- 40S ribosomal protein S4,40S ribosomal protein S4
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