3D structure

PDB id
7A01 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAAAAAAUUAGAG*CAG*CUGGAUACCGCAGC
Length
30 nucleotides
Bulged bases
7A01|1|K3|A|811
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7A01|1|K3|G|807
7A01|1|K3|A|808
7A01|1|K3|A|809
7A01|1|K3|A|810
7A01|1|K3|A|811
7A01|1|K3|A|812
7A01|1|K3|A|813
7A01|1|K3|U|814
7A01|1|K3|U|815
7A01|1|K3|A|816
7A01|1|K3|G|817
7A01|1|K3|A|818
7A01|1|K3|G|819
*
7A01|1|K3|C|829
7A01|1|K3|A|830
7A01|1|K3|G|831
*
7A01|1|K3|C|843
7A01|1|K3|U|844
7A01|1|K3|G|845
7A01|1|K3|G|846
7A01|1|K3|A|847
7A01|1|K3|U|848
7A01|1|K3|A|849
7A01|1|K3|C|850
7A01|1|K3|C|851
7A01|1|K3|G|852
7A01|1|K3|C|853
7A01|1|K3|A|854
7A01|1|K3|G|855
7A01|1|K3|C|856

Current chains

Chain K3
18S RIBOSOMAL RNA

Nearby chains

Chain G3
Ribosomal protein S11
Chain I5
40S ribosomal protein S24
Chain J5
Ribosomal protein S15a
Chain d3
Ribosomal protein S9 (Predicted)
Chain j3
40S ribosomal protein S4,40S ribosomal protein S4

Coloring options:

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