J3_7A01_036
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGUGGA*UAC*GGAAUUC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|G|1222
7A01|1|K3|A|1223
7A01|1|K3|G|1224
7A01|1|K3|U|1225
7A01|1|K3|G|1226
7A01|1|K3|G|1227
7A01|1|K3|A|1228
*
7A01|1|K3|U|1530
7A01|1|K3|A|1531
7A01|1|K3|C|1532
*
7A01|1|K3|G|1638
7A01|1|K3|G|1639
7A01|1|K3|A|1640
7A01|1|K3|A|1641
7A01|1|K3|U|1642
7A01|1|K3|U|1643
7A01|1|K3|C|1644
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- Uncharacterized protein
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain G5
- ribosomal protein uS13
- Chain H5
- Uncharacterized protein
- Chain M3
- ribosomal protein eS25
- Chain N3
- Ribosomal protein S5
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