J3_7A01_038
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGGCAUGCU*AGAGGGACAAG*CCCGAGAUUG
- Length
- 31 nucleotides
- Bulged bases
- 7A01|1|K3|U|1397, 7A01|1|K3|G|1473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|C|1391
7A01|1|K3|U|1392
7A01|1|K3|G|1393
7A01|1|K3|G|1394
7A01|1|K3|C|1395
7A01|1|K3|A|1396
7A01|1|K3|U|1397
7A01|1|K3|G|1398
7A01|1|K3|C|1399
7A01|1|K3|U|1400
*
7A01|1|K3|A|1446
7A01|1|K3|G|1447
7A01|1|K3|A|1448
7A01|1|K3|G|1449
7A01|1|K3|G|1450
7A01|1|K3|G|1451
7A01|1|K3|A|1452
7A01|1|K3|C|1453
7A01|1|K3|A|1454
7A01|1|K3|A|1455
7A01|1|K3|G|1456
*
7A01|1|K3|C|1470
7A01|1|K3|C|1471
7A01|1|K3|C|1472
7A01|1|K3|G|1473
7A01|1|K3|A|1474
7A01|1|K3|G|1475
7A01|1|K3|A|1476
7A01|1|K3|U|1477
7A01|1|K3|U|1478
7A01|1|K3|G|1479
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- Uncharacterized protein
- Chain C3
- Uncharacterized protein
- Chain H3
- ribosomal protein uS14
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain N3
- Ribosomal protein S5
- Chain Y3
- Ribosomal protein S3
- Chain a3
- ribosomal protein RACK1
Coloring options: