J3_7A01_039

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

7A01|1|e2|A|218, 7A01|1|e2|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|196
7A01|1|e2|A|197
7A01|1|e2|A|198
7A01|1|e2|G|199
*
7A01|1|e2|C|215
7A01|1|e2|C|216
7A01|1|e2|C|217
7A01|1|e2|A|218
7A01|1|e2|G|219
7A01|1|e2|C|220
7A01|1|e2|C|221
7A01|1|e2|C|222
7A01|1|e2|G|223
7A01|1|e2|U|224
7A01|1|e2|G|225
7A01|1|e2|G|226
7A01|1|e2|A|227
7A01|1|e2|C|228
*
7A01|1|e2|G|240
7A01|1|e2|G|241
7A01|1|e2|U|242
7A01|1|e2|A|243
7A01|1|e2|G|244

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain o2

Ribosomal protein L26

Chain t2

uL4