J3_7A01_043
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAACUA*UAGGGG*CUAAUCGAA
- Length
- 22 nucleotides
- Bulged bases
- 7A01|1|e2|U|1636, 7A01|1|e2|A|1638, 7A01|1|e2|U|1639, 7A01|1|e2|G|1641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|e2|U|1531
7A01|1|e2|G|1532
7A01|1|e2|A|1533
7A01|1|e2|A|1534
7A01|1|e2|C|1535
7A01|1|e2|U|1536
7A01|1|e2|A|1537
*
7A01|1|e2|U|1622
7A01|1|e2|A|1623
7A01|1|e2|G|1624
7A01|1|e2|G|1625
7A01|1|e2|G|1626
7A01|1|e2|G|1627
*
7A01|1|e2|C|1635
7A01|1|e2|U|1636
7A01|1|e2|A|1637
7A01|1|e2|A|1638
7A01|1|e2|U|1639
7A01|1|e2|C|1640
7A01|1|e2|G|1641
7A01|1|e2|A|1642
7A01|1|e2|A|1643
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain 92
- Uncharacterized protein
- Chain C2
- Ribosomal protein L37
- Chain D2
- ribosomal protein eL39
- Chain H2
- uL22
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