J3_7A01_046
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 7A01|1|e2|C|2470, 7A01|1|e2|A|2472, 7A01|1|e2|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|e2|A|2451
7A01|1|e2|G|2452
7A01|1|e2|A|2453
7A01|1|e2|U|2454
7A01|1|e2|G|2455
7A01|1|e2|G|2456
*
7A01|1|e2|C|2465
7A01|1|e2|G|2466
7A01|1|e2|U|2467
7A01|1|e2|U|2468
7A01|1|e2|C|2469
7A01|1|e2|C|2470
7A01|1|e2|G|2471
7A01|1|e2|A|2472
7A01|1|e2|A|2473
7A01|1|e2|G|2474
7A01|1|e2|G|2475
7A01|1|e2|G|2476
*
7A01|1|e2|C|2501
7A01|1|e2|G|2502
7A01|1|e2|G|2503
7A01|1|e2|C|2504
7A01|1|e2|C|2505
7A01|1|e2|G|2506
7A01|1|e2|A|2507
7A01|1|e2|U|2508
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain 92
- Uncharacterized protein
- Chain C2
- Ribosomal protein L37
- Chain V2
- 60S RIBOSOMAL PROTEIN EL8
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain m2
- Uncharacterized protein
Coloring options: