J3_7A01_047
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 7A01|1|e2|C|4116, 7A01|1|e2|U|4117, 7A01|1|e2|U|4118, 7A01|1|e2|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|e2|G|4091
7A01|1|e2|G|4092
7A01|1|e2|G|4093
7A01|1|e2|G|4094
7A01|1|e2|G|4095
7A01|1|e2|C|4096
7A01|1|e2|G|4097
*
7A01|1|e2|C|4112
7A01|1|e2|U|4113
7A01|1|e2|C|4114
7A01|1|e2|G|4115
7A01|1|e2|C|4116
7A01|1|e2|U|4117
7A01|1|e2|U|4118
7A01|1|e2|C|4119
7A01|1|e2|U|4120
7A01|1|e2|G|4121
7A01|1|e2|G|4122
7A01|1|e2|C|4123
7A01|1|e2|G|4124
7A01|1|e2|C|4125
7A01|1|e2|C|4126
7A01|1|e2|A|4127
7A01|1|e2|A|4128
7A01|1|e2|G|4129
*
7A01|1|e2|C|4155
7A01|1|e2|G|4156
7A01|1|e2|A|4157
7A01|1|e2|C|4158
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 13
- Ribosomal protein L30
- Chain 22
- 60S ribosomal protein L27
- Chain 92
- Uncharacterized protein
- Chain I2
- ribosomal protein eL43
- Chain V2
- 60S RIBOSOMAL PROTEIN EL8
- Chain V3
- 40S ribosomal protein S3a
- Chain y2
- eL34
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