J3_7A01_049

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGUUG*CCUUCG*CGCACCGGCCGUUCGUGG

Length

30 nucleotides

Bulged bases

7A01|1|e2|C|4883, 7A01|1|e2|C|4937, 7A01|1|e2|C|4940, 7A01|1|e2|G|4941, 7A01|1|e2|C|4944, 7A01|1|e2|G|4945, 7A01|1|e2|U|4946, 7A01|1|e2|U|4947, 7A01|1|e2|G|4951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|4749
7A01|1|e2|G|4750
7A01|1|e2|G|4751
7A01|1|e2|U|4752
7A01|1|e2|U|4753
7A01|1|e2|G|4754
*
7A01|1|e2|C|4879
7A01|1|e2|C|4880
7A01|1|e2|U|4881
7A01|1|e2|U|4882
7A01|1|e2|C|4883
7A01|1|e2|G|4884
*
7A01|1|e2|C|4935
7A01|1|e2|G|4936
7A01|1|e2|C|4937
7A01|1|e2|A|4938
7A01|1|e2|C|4939
7A01|1|e2|C|4940
7A01|1|e2|G|4941
7A01|1|e2|G|4942
7A01|1|e2|C|4943
7A01|1|e2|C|4944
7A01|1|e2|G|4945
7A01|1|e2|U|4946
7A01|1|e2|U|4947
7A01|1|e2|C|4948
7A01|1|e2|G|4949
7A01|1|e2|U|4950
7A01|1|e2|G|4951
7A01|1|e2|G|4952

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 02

Ribosomal protein L14

Chain 62

60S RIBOSOMAL PROTEIN EL20

Chain T2

60S ribosomal protein L6

Chain w2

60S RIBOSOMAL PROTEIN UL13

Chain x2

eL33