J3_7A01_051
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 7A01|1|K3|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A01_051 not in the Motif Atlas
- Homologous match to J3_8CRE_074
- Geometric discrepancy: 0.2913
- The information below is about J3_8CRE_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7A01|1|K3|U|682
7A01|1|K3|G|683
7A01|1|K3|G|684
*
7A01|1|K3|U|918
7A01|1|K3|A|919
7A01|1|K3|A|920
7A01|1|K3|G|921
7A01|1|K3|A|922
7A01|1|K3|G|923
*
7A01|1|K3|C|1019
7A01|1|K3|A|1020
7A01|1|K3|U|1021
7A01|1|K3|U|1022
7A01|1|K3|A|1023
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain F3
- ribosomal protein uS15
- Chain G3
- Ribosomal protein S11
- Chain J5
- Ribosomal protein S15a
- Chain L3
- 40S ribosomal protein S27
- Chain P3
- 40S RIBOSOMAL PROTEIN ES7
- Chain T3
- Ribosomal protein S23
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