J3_7A01_054

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUCCCACC*GGCG*CGG

Length

16 nucleotides

Bulged bases

7A01|1|e2|C|1101, 7A01|1|e2|C|1103, 7A01|1|e2|C|1104, 7A01|1|e2|G|1166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|U|1100
7A01|1|e2|C|1101
7A01|1|e2|U|1102
7A01|1|e2|C|1103
7A01|1|e2|C|1104
7A01|1|e2|C|1105
7A01|1|e2|A|1106
7A01|1|e2|C|1107
7A01|1|e2|C|1108
*
7A01|1|e2|G|1165
7A01|1|e2|G|1166
7A01|1|e2|C|1167
7A01|1|e2|G|1168
*
7A01|1|e2|C|1193
7A01|1|e2|G|1194
7A01|1|e2|G|1195

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain G2

60S ribosomal protein L5