J3_7A09_004

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7A09|1|2|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A09|1|2|C|1094
7A09|1|2|C|1095
7A09|1|2|G|1096
*
7A09|1|2|U|1136
7A09|1|2|U|1137
7A09|1|2|C|1138
7A09|1|2|C|1139
7A09|1|2|G|1140
*
7A09|1|2|C|1147
7A09|1|2|A|1148
7A09|1|2|A|1149
7A09|1|2|A|1150
7A09|1|2|G|1151

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S15a

Chain Q

40S ribosomal protein S26

Chain R

40S ribosomal protein S27

Chain a

40S ribosomal protein SA

Chain y

40S ribosomal protein S21