J3_7A09_007

3D structure

PDB id

7A09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State III

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUUAAUUU*GGGAAACCUCAC*GGCUGC

Length

27 nucleotides

Bulged bases

7A09|1|2|G|1256, 7A09|1|2|A|1258, 7A09|1|2|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A09|1|2|G|1236
7A09|1|2|C|1237
7A09|1|2|U|1238
7A09|1|2|U|1239
7A09|1|2|A|1240
7A09|1|2|A|1241
7A09|1|2|U|1242
7A09|1|2|U|1243
7A09|1|2|U|1244
*
7A09|1|2|G|1255
7A09|1|2|G|1256
7A09|1|2|G|1257
7A09|1|2|A|1258
7A09|1|2|A|1259
7A09|1|2|A|1260
7A09|1|2|C|1261
7A09|1|2|C|1262
7A09|1|2|U|1263
7A09|1|2|C|1264
7A09|1|2|A|1265
7A09|1|2|C|1266
*
7A09|1|2|G|1516
7A09|1|2|G|1517
7A09|1|2|C|1518
7A09|1|2|U|1519
7A09|1|2|G|1520
7A09|1|2|C|1521

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S20

Chain k

40S ribosomal protein S18

Chain l

40S ribosomal protein S29

Chain o

40S ribosomal protein S15