J3_7A1G_015

3D structure

PDB id

7A1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

7A1G|1|2|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A1G|1|2|A|213
7A1G|1|2|G|214
7A1G|1|2|A|215
7A1G|1|2|U|216
7A1G|1|2|A|217
7A1G|1|2|A|218
7A1G|1|2|A|219
7A1G|1|2|A|220
7A1G|1|2|A|221
7A1G|1|2|A|222
7A1G|1|2|U|223
7A1G|1|2|C|224
7A1G|1|2|A|225
7A1G|1|2|A|226
7A1G|1|2|U|227
7A1G|1|2|G|228
*
7A1G|1|2|C|237
7A1G|1|2|U|238
7A1G|1|2|C|239
7A1G|1|2|U|240
7A1G|1|2|U|241
7A1G|1|2|U|242
7A1G|1|2|G|243
*
7A1G|1|2|C|250
7A1G|1|2|A|251
7A1G|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A