3D structure

PDB id
7AF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state I (head domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AF5_001 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0683
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

7AF5|1|1|C|936
7AF5|1|1|A|937
7AF5|1|1|A|938
7AF5|1|1|G|939
*
7AF5|1|1|C|1344
7AF5|1|1|U|1345
7AF5|1|1|A|1346
7AF5|1|1|G|1347
7AF5|1|1|U|1348
7AF5|1|1|A|1349
7AF5|1|1|A|1350
*
7AF5|1|1|U|1372
7AF5|1|1|G|1373
7AF5|1|1|A|1374
7AF5|1|1|A|1375
7AF5|1|1|U|1376
7AF5|1|1|A|1377
7AF5|1|1|C|1378
7AF5|1|1|G|1379

Current chains

Chain 1
16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9

Coloring options:


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