3D structure

PDB id
7AF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state I (head domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
UAU*AGAC*GGUG
Length
11 nucleotides
Bulged bases
7AF5|1|1|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AF5_008 not in the Motif Atlas
Homologous match to J3_5J7L_010
Geometric discrepancy: 0.0903
The information below is about J3_5J7L_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82365.4
Basepair signature
cWW-F-cWW-cWW-F-F
Number of instances in this motif group
4

Unit IDs

7AF5|1|1|U|1116
7AF5|1|1|A|1117
7AF5|1|1|U|1118
*
7AF5|1|1|A|1155
7AF5|1|1|G|1156
7AF5|1|1|A|1157
7AF5|1|1|C|1158
*
7AF5|1|1|G|1181
7AF5|1|1|G|1182
7AF5|1|1|U|1183
7AF5|1|1|G|1184

Current chains

Chain 1
16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain B
30S ribosomal protein S2
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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