J3_7AFA_010
3D structure
- PDB id
- 7AFA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state F (head domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 7AFA|1|1|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AFA_010 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.119
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7AFA|1|1|C|990
7AFA|1|1|U|991
7AFA|1|1|U|992
7AFA|1|1|G|993
7AFA|1|1|A|994
7AFA|1|1|C|995
7AFA|1|1|A|996
7AFA|1|1|U|997
*
7AFA|1|1|A|1044
7AFA|1|1|C|1045
7AFA|1|1|A|1046
7AFA|1|1|G|1047
*
7AFA|1|1|C|1210
7AFA|1|1|U|1211
7AFA|1|1|U|1212
7AFA|1|1|A|1213
7AFA|1|1|C|1214
7AFA|1|1|G|1215
Current chains
- Chain 1
- 16SrRNA (head domain of the 30S ribosome)
Nearby chains
- Chain N
- 30S ribosomal protein S14
Coloring options: