J3_7AFD_008
3D structure
- PDB id
- 7AFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state A (head domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 7AFD|1|1|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AFD_008 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.1365
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7AFD|1|1|U|1116
7AFD|1|1|A|1117
7AFD|1|1|U|1118
*
7AFD|1|1|A|1155
7AFD|1|1|G|1156
7AFD|1|1|A|1157
7AFD|1|1|C|1158
*
7AFD|1|1|G|1181
7AFD|1|1|G|1182
7AFD|1|1|U|1183
7AFD|1|1|G|1184
Current chains
- Chain 1
- 16SrRNA of the head domain (residue C931 to G1386)
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
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