J3_7AFD_010
3D structure
- PDB id
- 7AFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state A (head domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 7AFD|1|1|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AFD_010 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.1285
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7AFD|1|1|C|990
7AFD|1|1|U|991
7AFD|1|1|U|992
7AFD|1|1|G|993
7AFD|1|1|A|994
7AFD|1|1|C|995
7AFD|1|1|A|996
7AFD|1|1|U|997
*
7AFD|1|1|A|1044
7AFD|1|1|C|1045
7AFD|1|1|A|1046
7AFD|1|1|G|1047
*
7AFD|1|1|C|1210
7AFD|1|1|U|1211
7AFD|1|1|U|1212
7AFD|1|1|A|1213
7AFD|1|1|C|1214
7AFD|1|1|G|1215
Current chains
- Chain 1
- 16SrRNA of the head domain (residue C931 to G1386)
Nearby chains
- Chain N
- 30S ribosomal protein S14
Coloring options: