3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAAAC*GGGUUGUA*UG
Length
15 nucleotides
Bulged bases
7AS8|1|A|U|301
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AS8_003 not in the Motif Atlas
Homologous match to J3_7RQB_003
Geometric discrepancy: 0.1636
The information below is about J3_7RQB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97921.1
Basepair signature
cWW-F-F-tSH-tWH-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7AS8|1|A|C|272
7AS8|1|A|A|273
7AS8|1|A|A|274
7AS8|1|A|A|275
7AS8|1|A|C|276
*
7AS8|1|A|G|295
7AS8|1|A|G|296
7AS8|1|A|G|297
7AS8|1|A|U|298
7AS8|1|A|U|299
7AS8|1|A|G|300
7AS8|1|A|U|301
7AS8|1|A|A|302
*
7AS8|1|A|U|416
7AS8|1|A|G|417

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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