J3_7AS8_004

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7AS8|1|A|U|733, 7AS8|1|A|G|839, 7AS8|1|A|A|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AS8_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1008

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7AS8|1|A|U|730
7AS8|1|A|G|731
7AS8|1|A|A|732
7AS8|1|A|U|733
7AS8|1|A|C|734
7AS8|1|A|U|735
7AS8|1|A|A|736
*
7AS8|1|A|U|820
7AS8|1|A|A|821
7AS8|1|A|G|822
*
7AS8|1|A|C|838
7AS8|1|A|G|839
7AS8|1|A|A|840
7AS8|1|A|A|841

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain h

50S ribosomal protein L34