J3_7AS8_005

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AS8_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0909

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7AS8|1|A|C|745
7AS8|1|A|A|746
7AS8|1|A|G|747
*
7AS8|1|A|C|779
7AS8|1|A|G|780
7AS8|1|A|A|781
7AS8|1|A|A|782
7AS8|1|A|C|783
*
7AS8|1|A|G|807
7AS8|1|A|A|808
7AS8|1|A|U|809
7AS8|1|A|G|810

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2