3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UUG*CUAACC*GAGACAG
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7AS8_010 not in the Motif Atlas
Homologous match to J3_4WF9_007
Geometric discrepancy: 0.1321
The information below is about J3_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07703.1
Basepair signature
cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

7AS8|1|A|U|2120
7AS8|1|A|U|2121
7AS8|1|A|G|2122
*
7AS8|1|A|C|2225
7AS8|1|A|U|2226
7AS8|1|A|A|2227
7AS8|1|A|A|2228
7AS8|1|A|C|2229
7AS8|1|A|C|2230
*
7AS8|1|A|G|2251
7AS8|1|A|A|2252
7AS8|1|A|G|2253
7AS8|1|A|A|2254
7AS8|1|A|C|2255
7AS8|1|A|A|2256
7AS8|1|A|G|2257

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L2
Chain b
50S ribosomal protein L28

Coloring options:


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