J3_7ASM_003

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

7ASM|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASM_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1648

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7ASM|1|A|C|272
7ASM|1|A|A|273
7ASM|1|A|A|274
7ASM|1|A|A|275
7ASM|1|A|C|276
*
7ASM|1|A|G|295
7ASM|1|A|G|296
7ASM|1|A|G|297
7ASM|1|A|U|298
7ASM|1|A|U|299
7ASM|1|A|G|300
7ASM|1|A|U|301
7ASM|1|A|A|302
*
7ASM|1|A|U|415
7ASM|1|A|G|416

Current chains

Chain A

23S rRNA

Nearby chains