J3_7ASP_006

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAAAC*GGGGUUGUA*UG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ASP_006 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.3774

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7ASP|1|Y|C|272
7ASP|1|Y|A|273
7ASP|1|Y|A|274
7ASP|1|Y|A|275
7ASP|1|Y|C|276
*
7ASP|1|Y|G|294
7ASP|1|Y|G|295
7ASP|1|Y|G|296
7ASP|1|Y|G|297
7ASP|1|Y|U|298
7ASP|1|Y|U|299
7ASP|1|Y|G|300
7ASP|1|Y|U|301
7ASP|1|Y|A|302
*
7ASP|1|Y|U|415
7ASP|1|Y|G|416

Current chains

Chain Y

23S rRNA

Nearby chains