J3_7ASP_011
3D structure
- PDB id
- 7ASP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S after 50 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UCGGGU*AUAA*UA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ASP_011 not in the Motif Atlas
- Homologous match to J3_5J7L_043
- Geometric discrepancy: 0.4291
- The information below is about J3_5J7L_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92705.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7ASP|1|Y|U|1381
7ASP|1|Y|C|1382
7ASP|1|Y|G|1383
7ASP|1|Y|G|1384
7ASP|1|Y|G|1385
7ASP|1|Y|U|1386
*
7ASP|1|Y|A|1419
7ASP|1|Y|U|1420
7ASP|1|Y|A|1421
7ASP|1|Y|A|1422
*
7ASP|1|Y|U|1439
7ASP|1|Y|A|1440
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L23
Coloring options: