3D structure

PDB id
7ASP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S after 50 minutes incubation at 37C
Experimental method
ELECTRON MICROSCOPY
Resolution
2.86 Å

Loop

Sequence
CUGC*GCGGCCGUAACUAUAACGGUCCUAAGGUAG*CGAAAG
Length
40 nucleotides
Bulged bases
7ASP|1|Y|C|1941, 7ASP|1|Y|U|1944, 7ASP|1|Y|A|1998
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7ASP|1|Y|C|1860
7ASP|1|Y|U|1861
7ASP|1|Y|G|1862
7ASP|1|Y|C|1863
*
7ASP|1|Y|G|1931
7ASP|1|Y|C|1932
7ASP|1|Y|G|1933
7ASP|1|Y|G|1934
7ASP|1|Y|C|1935
7ASP|1|Y|C|1936
7ASP|1|Y|G|1937
7ASP|1|Y|U|1938
7ASP|1|Y|A|1939
7ASP|1|Y|A|1940
7ASP|1|Y|C|1941
7ASP|1|Y|U|1942
7ASP|1|Y|A|1943
7ASP|1|Y|U|1944
7ASP|1|Y|A|1945
7ASP|1|Y|A|1946
7ASP|1|Y|C|1947
7ASP|1|Y|G|1948
7ASP|1|Y|G|1949
7ASP|1|Y|U|1950
7ASP|1|Y|C|1951
7ASP|1|Y|C|1952
7ASP|1|Y|U|1953
7ASP|1|Y|A|1954
7ASP|1|Y|A|1955
7ASP|1|Y|G|1956
7ASP|1|Y|G|1957
7ASP|1|Y|U|1958
7ASP|1|Y|A|1959
7ASP|1|Y|G|1960
*
7ASP|1|Y|C|1994
7ASP|1|Y|G|1995
7ASP|1|Y|A|1996
7ASP|1|Y|A|1997
7ASP|1|Y|A|1998
7ASP|1|Y|G|1999

Current chains

Chain Y
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain X
Small subunit ribosomal RNA; SSU rRNA

Coloring options:

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