J3_7ASP_020

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GACCCGCACAAGC*GCUAGUAAUC*GUGAAUACGUUCCCGGGUC

Length

42 nucleotides

Bulged bases

7ASP|1|X|C|940, 7ASP|1|X|G|1358, 7ASP|1|X|A|1385, 7ASP|1|X|C|1389, 7ASP|1|X|C|1395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ASP|1|X|G|938
7ASP|1|X|A|939
7ASP|1|X|C|940
7ASP|1|X|C|941
7ASP|1|X|C|942
7ASP|1|X|G|943
7ASP|1|X|C|944
7ASP|1|X|A|945
7ASP|1|X|C|946
7ASP|1|X|A|947
7ASP|1|X|A|948
7ASP|1|X|G|949
7ASP|1|X|C|950
*
7ASP|1|X|G|1354
7ASP|1|X|C|1355
7ASP|1|X|U|1356
7ASP|1|X|A|1357
7ASP|1|X|G|1358
7ASP|1|X|U|1359
7ASP|1|X|A|1360
7ASP|1|X|A|1361
7ASP|1|X|U|1362
7ASP|1|X|C|1363
*
7ASP|1|X|G|1382
7ASP|1|X|U|1383
7ASP|1|X|G|1384
7ASP|1|X|A|1385
7ASP|1|X|A|1386
7ASP|1|X|U|1387
7ASP|1|X|A|1388
7ASP|1|X|C|1389
7ASP|1|X|G|1390
7ASP|1|X|U|1391
7ASP|1|X|U|1392
7ASP|1|X|C|1393
7ASP|1|X|C|1394
7ASP|1|X|C|1395
7ASP|1|X|G|1396
7ASP|1|X|G|1397
7ASP|1|X|G|1398
7ASP|1|X|U|1399
7ASP|1|X|C|1400

Current chains

Chain X

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S7

Chain q

30S ribosomal protein S9