J3_7AZS_001

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1134

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7AZS|1|16SA|G|692
7AZS|1|16SA|C|693
*
7AZS|1|16SA|G|1002
7AZS|1|16SA|G|1003
7AZS|1|16SA|A|1004
7AZS|1|16SA|A|1005
7AZS|1|16SA|U|1006
7AZS|1|16SA|C|1007
7AZS|1|16SA|U|1008
*
7AZS|1|16SA|A|1034
7AZS|1|16SA|G|1035
7AZS|1|16SA|C|1036

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain L9B

50S ribosomal protein L9

Chain S12A

30S ribosomal protein S12

Chain S16A

30S ribosomal protein S16