J3_7AZS_020
3D structure
- PDB id
- 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 7AZS|1|16SB|A|1598, 7AZS|1|16SB|G|1599, 7AZS|1|16SB|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7AZS_020 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1392
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7AZS|1|16SB|U|1578
7AZS|1|16SB|U|1579
7AZS|1|16SB|U|1580
7AZS|1|16SB|A|1581
7AZS|1|16SB|A|1582
7AZS|1|16SB|U|1583
7AZS|1|16SB|U|1584
7AZS|1|16SB|C|1585
*
7AZS|1|16SB|G|1596
7AZS|1|16SB|A|1597
7AZS|1|16SB|A|1598
7AZS|1|16SB|G|1599
7AZS|1|16SB|A|1600
7AZS|1|16SB|A|1601
7AZS|1|16SB|C|1602
7AZS|1|16SB|C|1603
7AZS|1|16SB|U|1604
7AZS|1|16SB|U|1605
7AZS|1|16SB|A|1606
7AZS|1|16SB|C|1607
*
7AZS|1|16SB|G|1848
7AZS|1|16SB|G|1849
7AZS|1|16SB|C|1850
7AZS|1|16SB|G|1851
7AZS|1|16SB|A|1852
Current chains
- Chain 16SB
- 16S rRNA
Nearby chains
- Chain ASIB
- Transfer RNA; tRNA
- Chain S10B
- 30S ribosomal protein S10
- Chain S13B
- 30S ribosomal protein S13
- Chain S14B
- 30S ribosomal protein S14 type Z
- Chain S19B
- 30S ribosomal protein S19
Coloring options: