J3_7AZS_033

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZS_033 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.0597

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7AZS|1|23SA|C|1347
7AZS|1|23SA|G|1348
7AZS|1|23SA|U|1349
7AZS|1|23SA|A|1350
7AZS|1|23SA|A|1351
7AZS|1|23SA|G|1352
*
7AZS|1|23SA|C|1674
7AZS|1|23SA|G|1675
7AZS|1|23SA|G|1676
*
7AZS|1|23SA|U|1689
7AZS|1|23SA|C|1690
7AZS|1|23SA|A|1691
7AZS|1|23SA|G|1692

Current chains

Chain 23SA

23S rRNA

Nearby chains