Loop J3_7AZS

3D structure

PDB id: 7AZS (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: GA(4SU)AGCUC*GAGCAGG*CCGU(7MG)UCCUUGG(5MU)(PSU)CGAUUCCGAGUC
Length: 41 nucleotides
Bulged bases: 7AZS|1|ASIA|U|47
QA status: Modified nucleotides: 4SU, 7MG, 5MU, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7AZS|1|ASIA|G|6
7AZS|1|ASIA|A|7
7AZS|1|ASIA|4SU|8
7AZS|1|ASIA|A|9
7AZS|1|ASIA|G|10
7AZS|1|ASIA|C|11
7AZS|1|ASIA|U|12
7AZS|1|ASIA|C|13
*
7AZS|1|ASIA|G|22
7AZS|1|ASIA|A|23
7AZS|1|ASIA|G|24
7AZS|1|ASIA|C|25
7AZS|1|ASIA|A|26
7AZS|1|ASIA|G|27
7AZS|1|ASIA|G|28
*
7AZS|1|ASIA|C|42
7AZS|1|ASIA|C|43
7AZS|1|ASIA|G|44
7AZS|1|ASIA|U|45
7AZS|1|ASIA|7MG|46
7AZS|1|ASIA|U|47
7AZS|1|ASIA|C|48
7AZS|1|ASIA|C|49
7AZS|1|ASIA|U|50
7AZS|1|ASIA|U|51
7AZS|1|ASIA|G|52
7AZS|1|ASIA|G|53
7AZS|1|ASIA|5MU|54
7AZS|1|ASIA|PSU|55
7AZS|1|ASIA|C|56
7AZS|1|ASIA|G|57
7AZS|1|ASIA|A|58
7AZS|1|ASIA|U|59
7AZS|1|ASIA|U|60
7AZS|1|ASIA|C|61
7AZS|1|ASIA|C|62
7AZS|1|ASIA|G|63
7AZS|1|ASIA|A|64
7AZS|1|ASIA|G|65
7AZS|1|ASIA|U|66
7AZS|1|ASIA|C|67

Current chains

Chain ASIA: Phe-tRNA

Nearby chains

Chain 16SA: Small subunit ribosomal RNA; SSU rRNA
Chain 23SA: Large subunit ribosomal RNA; LSU rRNA
Chain L16A: 50S ribosomal protein L16
Chain L25A: 50S ribosomal protein L25
Chain PSIA: Transfer RNA; tRNA

J3_7AZS_075