J3_7AZS_084

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

A(4SU)AGCUCAGUCGGUAGAGCAGG*CCGUGUCC*GU

Length

32 nucleotides

Bulged bases

7AZS|1|TRNA|C|17, 7AZS|1|TRNA|G|18, 7AZS|1|TRNA|G|19, 7AZS|1|TRNA|U|20, 7AZS|1|TRNA|U|47

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7AZS|1|TRNA|A|7
7AZS|1|TRNA|4SU|8
7AZS|1|TRNA|A|9
7AZS|1|TRNA|G|10
7AZS|1|TRNA|C|11
7AZS|1|TRNA|U|12
7AZS|1|TRNA|C|13
7AZS|1|TRNA|A|14
7AZS|1|TRNA|G|15
7AZS|1|TRNA|U|16
7AZS|1|TRNA|C|17
7AZS|1|TRNA|G|18
7AZS|1|TRNA|G|19
7AZS|1|TRNA|U|20
7AZS|1|TRNA|A|21
7AZS|1|TRNA|G|22
7AZS|1|TRNA|A|23
7AZS|1|TRNA|G|24
7AZS|1|TRNA|C|25
7AZS|1|TRNA|A|26
7AZS|1|TRNA|G|27
7AZS|1|TRNA|G|28
*
7AZS|1|TRNA|C|42
7AZS|1|TRNA|C|43
7AZS|1|TRNA|G|44
7AZS|1|TRNA|U|45
7AZS|1|TRNA|G|46
7AZS|1|TRNA|U|47
7AZS|1|TRNA|C|48
7AZS|1|TRNA|C|49
*
7AZS|1|TRNA|G|65
7AZS|1|TRNA|U|66

Current chains

Chain TRNA

Phe-tRNA

Nearby chains

Chain 5SA

5S ribosomal RNA; 5S rRNA

Chain L18A

50S ribosomal protein L18