J3_7AZY_013

3D structure

PDB id

7AZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Context-specific inhibition of eukaryotic translation by macrolide antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

2.877 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAG*UGAU

Length

25 nucleotides

Bulged bases

7AZY|1|E|G|2549, 7AZY|1|E|U|2550, 7AZY|1|E|U|2551, 7AZY|1|E|A|2554, 7AZY|1|E|U|2558, 7AZY|1|E|U|2559, 7AZY|1|E|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7AZY_013 not in the Motif Atlas

Homologous match to J3_8C3A_009

Geometric discrepancy: 0.1557

The information below is about J3_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02167.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7AZY|1|E|A|2529
7AZY|1|E|G|2530
7AZY|1|E|C|2531
7AZY|1|E|U|2532
*
7AZY|1|E|A|2547
7AZY|1|E|C|2548
7AZY|1|E|G|2549
7AZY|1|E|U|2550
7AZY|1|E|U|2551
7AZY|1|E|C|2552
7AZY|1|E|U|2553
7AZY|1|E|A|2554
7AZY|1|E|G|2555
7AZY|1|E|C|2556
7AZY|1|E|A|2557
7AZY|1|E|U|2558
7AZY|1|E|U|2559
7AZY|1|E|C|2560
7AZY|1|E|A|2561
7AZY|1|E|A|2562
7AZY|1|E|G|2563
*
7AZY|1|E|U|2578
7AZY|1|E|G|2579
7AZY|1|E|A|2580
7AZY|1|E|U|2581

Current chains

Chain E

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L34-A

Chain I

60S ribosomal protein L25

Chain O

60S ribosomal protein L27-A

Chain U

60S ribosomal protein L43-A

Chain b

60S ribosomal protein L8-A

Chain x

60S ribosomal protein L2-A