J3_7B5K_008

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B5K_008 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1195

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7B5K|1|A|U|1344
7B5K|1|A|C|1345
7B5K|1|A|G|1346
7B5K|1|A|A|1347
7B5K|1|A|C|1348
7B5K|1|A|C|1349
*
7B5K|1|A|G|1382
7B5K|1|A|A|1383
7B5K|1|A|A|1384
7B5K|1|A|A|1385
*
7B5K|1|A|U|1402
7B5K|1|A|A|1403

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23