3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
7B5K|1|A|A|2518, 7B5K|1|A|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7B5K_011 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0896
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

7B5K|1|A|C|2517
7B5K|1|A|A|2518
7B5K|1|A|U|2519
7B5K|1|A|C|2520
*
7B5K|1|A|G|2545
7B5K|1|A|U|2546
7B5K|1|A|A|2547
*
7B5K|1|A|U|2561
7B5K|1|A|U|2562
7B5K|1|A|U|2563
7B5K|1|A|A|2564
7B5K|1|A|A|2565
7B5K|1|A|A|2566
7B5K|1|A|G|2567

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L14

Coloring options:


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