J3_7B5K_038

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

7B5K|1|a|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B5K_038 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.118

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7B5K|1|a|U|1116
7B5K|1|a|A|1117
7B5K|1|a|U|1118
*
7B5K|1|a|A|1155
7B5K|1|a|G|1156
7B5K|1|a|A|1157
7B5K|1|a|C|1158
7B5K|1|a|U|1159
7B5K|1|a|G|1160
7B5K|1|a|C|1161
*
7B5K|1|a|G|1175
7B5K|1|a|A|1176
7B5K|1|a|G|1177
7B5K|1|a|G|1178
7B5K|1|a|A|1179
7B5K|1|a|A|1180
7B5K|1|a|G|1181
7B5K|1|a|G|1182
7B5K|1|a|U|1183
7B5K|1|a|G|1184

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14