J3_7B7D_019

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

7B7D|1|LA|A|1065, 7B7D|1|LA|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_019 not in the Motif Atlas

Homologous match to J3_5TBW_006

Geometric discrepancy: 0.3281

The information below is about J3_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11066.3

Basepair signature

cWW-cSS-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7B7D|1|LA|U|986
7B7D|1|LA|U|987
*
7B7D|1|LA|A|1062
7B7D|1|LA|G|1063
7B7D|1|LA|A|1064
7B7D|1|LA|A|1065
7B7D|1|LA|G|1066
*
7B7D|1|LA|C|1092
7B7D|1|LA|A|1093
7B7D|1|LA|U|1094
7B7D|1|LA|U|1095
7B7D|1|LA|U|1096
7B7D|1|LA|G|1097
7B7D|1|LA|A|1098

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L7-A

Chain LX

60S ribosomal protein L29

Chain Lp

60S ribosomal protein L21-A