J3_7B7D_026
3D structure
- PDB id
- 7B7D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 7B7D|1|LA|G|2549, 7B7D|1|LA|U|2550, 7B7D|1|LA|U|2551, 7B7D|1|LA|A|2554, 7B7D|1|LA|U|2558, 7B7D|1|LA|U|2559, 7B7D|1|LA|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7B7D_026 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1633
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7B7D|1|LA|A|2529
7B7D|1|LA|G|2530
7B7D|1|LA|C|2531
7B7D|1|LA|U|2532
*
7B7D|1|LA|A|2547
7B7D|1|LA|C|2548
7B7D|1|LA|G|2549
7B7D|1|LA|U|2550
7B7D|1|LA|U|2551
7B7D|1|LA|C|2552
7B7D|1|LA|U|2553
7B7D|1|LA|A|2554
7B7D|1|LA|G|2555
7B7D|1|LA|C|2556
7B7D|1|LA|A|2557
7B7D|1|LA|U|2558
7B7D|1|LA|U|2559
7B7D|1|LA|C|2560
7B7D|1|LA|A|2561
7B7D|1|LA|A|2562
7B7D|1|LA|G|2563
*
7B7D|1|LA|U|2578
7B7D|1|LA|G|2579
7B7D|1|LA|A|2580
7B7D|1|LA|U|2581
Current chains
- Chain LA
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LT
- 60S ribosomal protein L25
- Chain LV
- 60S ribosomal protein L27-A
- Chain LY
- 60S ribosomal protein L30
- Chain Lc
- 60S ribosomal protein L34-A
- Chain Ll
- 60S ribosomal protein L43-A
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