J3_7B7D_029

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7B7D_029 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.1308

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7B7D|1|LA|C|3298
7B7D|1|LA|A|3299
7B7D|1|LA|U|3300
*
7B7D|1|LA|A|3314
7B7D|1|LA|G|3315
7B7D|1|LA|A|3316
7B7D|1|LA|U|3317
7B7D|1|LA|G|3318
*
7B7D|1|LA|C|3388
7B7D|1|LA|U|3389
7B7D|1|LA|G|3390

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein L17-A

Chain LZ

60S ribosomal protein L31-A