J3_7B7D_039

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGACAUGG*CUGG*CAUAAUG

Length

20 nucleotides

Bulged bases

7B7D|1|LA|A|438, 7B7D|1|LA|A|440, 7B7D|1|LA|U|441, 7B7D|1|LA|G|442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7B7D|1|LA|C|435
7B7D|1|LA|A|436
7B7D|1|LA|G|437
7B7D|1|LA|A|438
7B7D|1|LA|C|439
7B7D|1|LA|A|440
7B7D|1|LA|U|441
7B7D|1|LA|G|442
7B7D|1|LA|G|443
*
7B7D|1|LA|C|492
7B7D|1|LA|U|493
7B7D|1|LA|G|494
7B7D|1|LA|G|495
*
7B7D|1|LA|C|618
7B7D|1|LA|A|619
7B7D|1|LA|U|620
7B7D|1|LA|A|621
7B7D|1|LA|A|622
7B7D|1|LA|U|623
7B7D|1|LA|G|624

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L6-B

Chain LR

60S ribosomal protein L17-A

Chain La

60S ribosomal protein L32

Chain Lb

60S ribosomal protein L33-A