J3_7BOD_001
3D structure
- PDB id
- 7BOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state M (body domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7BOD_001 not in the Motif Atlas
- Homologous match to J3_5J7L_001
- Geometric discrepancy: 0.0658
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7BOD|1|A|G|46
7BOD|1|A|C|47
*
7BOD|1|A|G|361
7BOD|1|A|G|362
7BOD|1|A|A|363
7BOD|1|A|A|364
7BOD|1|A|U|365
7BOD|1|A|A|366
7BOD|1|A|U|367
*
7BOD|1|A|A|393
7BOD|1|A|G|394
7BOD|1|A|C|395
Current chains
- Chain A
- 16S rRNA (body domain of 30S subunit)
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: