J3_7BV8_010

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7BV8|1|A|A|2518, 7BV8|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7BV8_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1065

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7BV8|1|A|C|2517
7BV8|1|A|A|2518
7BV8|1|A|U|2519
7BV8|1|A|C|2520
*
7BV8|1|A|G|2545
7BV8|1|A|U|2546
7BV8|1|A|A|2547
*
7BV8|1|A|U|2561
7BV8|1|A|U|2562
7BV8|1|A|U|2563
7BV8|1|A|A|2564
7BV8|1|A|A|2565
7BV8|1|A|A|2566
7BV8|1|A|G|2567

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14