J3_7CPJ_009

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

7CPJ|1|A|U|2334, 7CPJ|1|A|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPJ|1|A|C|2295
7CPJ|1|A|U|2296
7CPJ|1|A|A|2297
7CPJ|1|A|A|2298
7CPJ|1|A|U|2299
*
7CPJ|1|A|A|2317
7CPJ|1|A|G|2318
7CPJ|1|A|G|2319
7CPJ|1|A|U|2320
7CPJ|1|A|U|2321
7CPJ|1|A|A|2322
7CPJ|1|A|G|2323
*
7CPJ|1|A|C|2332
7CPJ|1|A|A|2333
7CPJ|1|A|U|2334
7CPJ|1|A|A|2335
7CPJ|1|A|A|2336
7CPJ|1|A|G|2337

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Transfer RNA; tRNA

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27