J3_7CPJ_010

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7CPJ|1|A|A|2518, 7CPJ|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPJ_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1038

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7CPJ|1|A|C|2517
7CPJ|1|A|A|2518
7CPJ|1|A|U|2519
7CPJ|1|A|C|2520
*
7CPJ|1|A|G|2545
7CPJ|1|A|U|2546
7CPJ|1|A|A|2547
*
7CPJ|1|A|U|2561
7CPJ|1|A|U|2562
7CPJ|1|A|U|2563
7CPJ|1|A|A|2564
7CPJ|1|A|A|2565
7CPJ|1|A|A|2566
7CPJ|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14