J3_7CPJ_018

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPJ_018 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1208

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7CPJ|1|a|C|936
7CPJ|1|a|A|937
7CPJ|1|a|A|938
7CPJ|1|a|G|939
*
7CPJ|1|a|C|1344
7CPJ|1|a|U|1345
7CPJ|1|a|A|1346
7CPJ|1|a|G|1347
7CPJ|1|a|U|1348
7CPJ|1|a|A|1349
7CPJ|1|a|A|1350
*
7CPJ|1|a|U|1372
7CPJ|1|a|G|1373
7CPJ|1|a|A|1374
7CPJ|1|a|A|1375
7CPJ|1|a|U|1376
7CPJ|1|a|A|1377
7CPJ|1|a|C|1378
7CPJ|1|a|G|1379

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9