J3_7CPJ_029

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7CPJ|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7CPJ_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0808

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7CPJ|1|A|G|297
7CPJ|1|A|G|298
7CPJ|1|A|A|299
7CPJ|1|A|A|300
7CPJ|1|A|G|301
*
7CPJ|1|A|C|316
7CPJ|1|A|G|317
7CPJ|1|A|C|318
7CPJ|1|A|G|319
7CPJ|1|A|A|320
7CPJ|1|A|U|321
7CPJ|1|A|A|322
7CPJ|1|A|C|323
7CPJ|1|A|A|324
7CPJ|1|A|G|325
*
7CPJ|1|A|C|337
7CPJ|1|A|G|338
7CPJ|1|A|U|339
7CPJ|1|A|A|340
7CPJ|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24